Junie vs Kilo Code | agentconfig.ing

Junie vs Kilo CodeComparisonUpdated 2026-03-18

SUMMARY

Junie (Agent) uses markdown configuration while Kilo Code (IDE) uses markdown. They differ on 1 of 11 compared features. Both tools provide AI-assisted development but take different approaches to project configuration.

FEATURE COMPARISON

Feature	Junie	Kilo Code	Notes
Config format	markdown	markdown
Hierarchy support	✗	✗	Whether config files can be placed at multiple directory levels
Global config	✗	✗	User-wide configuration outside any project
Project config	✓	✓
Subdirectory scoping	✗	✗	Config files in subdirectories that apply only to that subtree
File inclusion / imports	✗	✗	Ability to include or reference other files from config
Ignore file	✗	✗
IDE integration	Agent	✓
Schema / structure	Free-form (Markdown)	Free-form (Markdown)	Whether config uses structured schema or free-form content
Git committed	✓	✓	Whether primary config files are intended to be version-controlled
Encoding	UTF-8	UTF-8

SIDE-BY-SIDE CODE SAMPLES

Junie

.junie/guidelines.md

markdown

# Project Guidelines

## Language & Framework
- Kotlin with Spring Boot 3.x
- Gradle with Kotlin DSL
- JDK 21 with virtual threads

## Architecture
- Hexagonal architecture (ports & adapters)
- Domain events for cross-module communication
- CQRS for read-heavy endpoints

## Code Standards
- Follow Kotlin coding conventions
- Use data classes for DTOs
- Prefer sealed classes for domain errors
- Extension functions over utility classes

## Testing
- JUnit 5 with Kotest assertions
- Testcontainers for integration tests
- MockK for mocking (not Mockito)

## Build & Run
- Build: ./gradlew build
- Test: ./gradlew test
- Run: ./gradlew bootRun

Kilo Code

.kilorules

markdown

# Project Rules

## Stack
- TypeScript 5.x with strict mode
- React 19 + Next.js 15 (App Router)
- Tailwind CSS v4 for styling
- Drizzle ORM for database access

## Code Standards
- Named exports only (no default exports)
- Prefer `const` assertions and satisfies operator
- Use Result<T, E> pattern for error handling
- Maximum 30 lines per function

## File Organization
- Colocate tests: `foo.ts` → `foo.test.ts`
- One component per file
- Barrel exports (index.ts) for public module APIs

## Git
- Conventional commits: feat|fix|chore|docs|test
- Squash merge feature branches
- Branch naming: type/description

KEY DIFFERENCES

1. IDE integration

Junie: Agent. Kilo Code: Supported.

WHICH SHOULD I USE?

Recommendation

Choose based on your IDE/CLI preference. If you use Junie, configure .junie/guidelines.md. If you use Kilo Code, configure .kilocodemodes. Many projects include config files for multiple tools so each team member can use their preferred editor.

PORTABILITY TIP

sync-instructions.sh

bash

# Maintain a single source of truth:
cp AI-INSTRUCTIONS.md CLAUDE.md
cp AI-INSTRUCTIONS.md .cursorrules
cp AI-INSTRUCTIONS.md AGENTS.md