Continue vs JunieUpdated 2026-03-16

SUMMARY

Continue (IDE) uses markdown configuration while Junie (Agent) uses markdown. They differ on 4 of 11 compared features. Both tools provide AI-assisted development but take different approaches to project configuration.

FEATURE COMPARISON

FeatureContinueJunie
Config formatmarkdownmarkdown
Hierarchy support
Global config
Project config
Subdirectory scoping
File inclusion / imports
Ignore file
IDE integrationAgent
Schema / structureFree-form (Markdown)Free-form (Markdown)
Git committed
EncodingUTF-8UTF-8

SIDE-BY-SIDE CODE SAMPLES

Continue
.continue/rules/*.md
markdown
# Code Style Rules

- Use TypeScript strict mode for all files
- Prefer named exports over default exports
- Use async/await over .then() chains
- Keep functions under 30 lines
- Use descriptive variable names (no single letters except loop counters)

Junie
.junie/guidelines.md
markdown
# Project Guidelines

## Language & Framework
- Kotlin with Spring Boot 3.x
- Gradle with Kotlin DSL
- JDK 21 with virtual threads

## Architecture
- Hexagonal architecture (ports & adapters)
- Domain events for cross-module communication
- CQRS for read-heavy endpoints

## Code Standards
- Follow Kotlin coding conventions
- Use data classes for DTOs
- Prefer sealed classes for domain errors
- Extension functions over utility classes

## Testing
- JUnit 5 with Kotest assertions
- Testcontainers for integration tests
- MockK for mocking (not Mockito)

## Build & Run
- Build: ./gradlew build
- Test: ./gradlew test
- Run: ./gradlew bootRun

KEY DIFFERENCES

1. Hierarchy support

Continue: Supported. Junie: Not supported.

2. Global config

Continue: Supported. Junie: Not supported.

3. Subdirectory scoping

Continue: Supported. Junie: Not supported.

4. IDE integration

Continue: Supported. Junie: Agent.

WHICH SHOULD I USE?

Recommendation

Choose based on your IDE/CLI preference. If you use Continue, configure .continue/config.yaml. If you use Junie, configure .junie/guidelines.md. Many projects include config files for multiple tools so each team member can use their preferred editor.

PORTABILITY TIP

sync-instructions.sh
bash
# Maintain a single source of truth:
cp AI-INSTRUCTIONS.md CLAUDE.md
cp AI-INSTRUCTIONS.md .cursorrules
cp AI-INSTRUCTIONS.md AGENTS.md

SEE ALSO

agentconfig.ing2026-03-16COMPARE(1)